Package: spCP 1.3

spCP: Spatially Varying Change Points

Implements a spatially varying change point model with unique intercepts, slopes, variance intercepts and slopes, and change points at each location. Inference is within the Bayesian setting using Markov chain Monte Carlo (MCMC). The response variable can be modeled as Gaussian (no nugget), probit or Tobit link and the five spatially varying parameter are modeled jointly using a multivariate conditional autoregressive (MCAR) prior. The MCAR is a unique process that allows for a dissimilarity metric to dictate the local spatial dependencies. Full details of the package can be found in the accompanying vignette. Furthermore, the details of the package can be found in the corresponding paper on arXiv by Berchuck et al (2018): "A spatially varying change points model for monitoring glaucoma progression using visual field data", <arxiv:1811.11038>.

Authors:Samuel I. Berchuck [aut, cre]

spCP_1.3.tar.gz
spCP_1.3.zip(r-4.5)spCP_1.3.zip(r-4.4)spCP_1.3.zip(r-4.3)
spCP_1.3.tgz(r-4.4-x86_64)spCP_1.3.tgz(r-4.4-arm64)spCP_1.3.tgz(r-4.3-x86_64)spCP_1.3.tgz(r-4.3-arm64)
spCP_1.3.tar.gz(r-4.5-noble)spCP_1.3.tar.gz(r-4.4-noble)
spCP_1.3.tgz(r-4.4-emscripten)spCP_1.3.tgz(r-4.3-emscripten)
spCP.pdf |spCP.html
spCP/json (API)

# Install 'spCP' in R:
install.packages('spCP', repos = c('https://berchuck.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/berchuck/spcp/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

openblascpp

3.70 score 4 scripts 180 downloads 4 exports 20 dependencies

Last updated 2 years agofrom:2744ef43bb. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 07 2025
R-4.5-win-x86_64OKJan 07 2025
R-4.5-linux-x86_64OKJan 07 2025
R-4.4-win-x86_64OKJan 07 2025
R-4.4-mac-x86_64OKJan 07 2025
R-4.4-mac-aarch64OKJan 07 2025
R-4.3-win-x86_64OKJan 07 2025
R-4.3-mac-x86_64OKJan 07 2025
R-4.3-mac-aarch64OKJan 07 2025

Exports:diagnosticsis.spCPPlotCPspCP

Dependencies:cliexpmfansigenericsgluelatticelifecyclemagrittrMatrixmsmmvtnormpillarpkgconfigRcppRcppArmadillorlangsurvivaltibbleutf8vctrs

Introduction to using R package: spCP

Rendered fromspCP-example.Rmdusingknitr::rmarkdownon Jan 07 2025.

Last update: 2018-11-28
Started: 2018-06-20